IRC logs of #shogun for Wednesday, 2017-03-01

« Tuesday, 2017-02-28 Index Thursday, 2017-03-02 »
--- Log opened Wed Mar 01 00:00:45 2017
@sukeyPull Request #3650 "Remove pthread header from SVMLightOneClass"  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/365000:20
@sukeyPull Request #3650 "Remove pthread header from SVMLightOneClass"  reopened by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/365000:20
@sukeyPull Request #3650 "Remove pthread header from SVMLightOneClass"  merged by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/365000:23
@sukeyNew Commit "Merge pull request #3650 from abhinavrai44/feature/openmp00:23
@sukeyRemove pthread header from SVMLightOneClass" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/7ec1bf1cf89faaf87de86a18a0811dfcb71f747100:23
shogun-buildbotbuild #149 of trusty - libshogun - viennacl is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/trusty%20-%20libshogun%20-%20viennacl/builds/149  blamelist: Viktor Gal <vigsterkr@gmail.com>00:25
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@sukeyPull Request #3101 "LLT linear solver using eigen3"  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/310100:43
@sukeyPull Request #2616 "Cleaning Up CFile"  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/261600:44
@sukeyPull Request #3142 "Workaround for #3140 Compilation error using newer Eigen library."  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/314200:45
@sukeyPull Request #3038 "Added Neural Tanh Layer and corresponding unit test"  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/303800:46
@sukeyPull Request #3037 "Added Neural HardTanh Layer and unit test"  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/303700:47
@sukeyPull Request #3234 "Added Vagrant configuration file for the Docker provider."  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/323400:48
@sukeyPull Request #3215 "Fixes #3214 UAIFile unittest comparison between signed and unsigned"  closed by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/321500:49
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mikelingwiking: hi, are you there?02:33
@wikingyes02:34
@wikingmikeling, whatsup02:34
mikelingwiking: could you please take a look at this pr https://github.com/shogun-toolbox/shogun/pull/3641? It's first reviewed by HeikoS, but I need it been merged first before I start to use SGVector instead of pinter02:35
mikelingpointer02:36
mikelingbecause that pr is about add test for kd-tree and fix some memory leaking error init02:36
mikeling* in it02:36
iRmantouhello everyone ! I just come here,i hope i can contribute to shoghun with my efforts in GSoC.But i am sorry i am not a GIRL.02:38
mikelingwhen I try to do the SGVector refactoring, I found we actually no kd tree unittest somehow and the KD tree actually doesn't work for multiple k situation, so I create that pr02:38
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@wikingmikeling, can you rebase this PR with the latest develop because all the CIs are failing... unrelated but that's why i wanna see the actual case with this02:43
@wikingmikeling, until i dont see greens on the PR tests02:43
@wikingi wont continue reviewing02:43
@wikingthnx02:43
mikelingwiking: sure, wait a minutes02:43
@wikingiRmantou, we dont have a mandatory quota for girls :)02:43
@wikinganyhow02:43
@wikingwelcome02:44
@wikingand happy hacking02:44
@wikingif you have any questions please use the mailing list or the irc02:44
@sukeyPull Request #3641 "add tests for KNN and fix an error in KDTree solver"  synchronized by MikeLing - https://github.com/shogun-toolbox/shogun/pull/364102:45
@wikingmmm fuck02:55
@wikingtravis is broken02:55
@wiking:(02:55
@wiking281102:56
@wikinghttps://www.traviscistatus.com/incidents/hmwq9yy5dh9d02:56
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mikelingthe report says all the services are functioning normally, but I still can't load data from github side https://travis-ci.org/shogun-toolbox/shogun/builds/20645287203:05
iRmantouthank u wiking :)  i saw the" Installing Shogun " saying that we dont support a binary installer on windows,so do i BEST use the linux? or windows is just OK，03:12
@wikingiRmantou, it's up to you03:14
@wikingit compiles on windows03:15
@wikingbut currently we dont have binary package for windows03:15
@wikingone of the entrance task is to actually create a binary package for windows03:15
mikelingwiking: the AppVeyor build is green, but I can't load data from travis :(03:20
iRmantouit 's a net problem03:20
iRmantoui03:21
iRmantouguess03:21
@wikingmikeling, unfortunately we'll have to wait then :)03:21
mikelingalright :)03:22
@wikingmikeling, i think travis has so many backlogged CI tasks03:25
@wikingthat currently it is not even in the queue :)03:25
mikelingwiking: yeah, let's wait for a while. :) BTW, what's your local clock?03:28
mikelingJust curious, because I always see you online  ;)03:29
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@wikingmmm utc+803:33
mikelingwiking: oh really? So it's 10:30AM in your there? I mean maybe we are in the same time zone!03:34
Ankit_http://shogun-toolbox.org/irclog/2017-02-28/ is producing 500 internal error :(03:34
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@wikingAnkit_, thnx for noting03:36
@wikingwill look into it03:36
Ankit_np, seems only 27 and 28 feb logs are in error, rest works03:41
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travis-ciit's Viktor Gal's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20641452504:17
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shogun-buildbotbuild #57 of nightly_default is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/5704:35
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shogun-buildbotbuild #35 of nightly_all is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_all/builds/3505:09
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OXPHOS_wiking: there? I'm done with rebasing. How would you review it? Should I open a public PR against dev?06:45
@wikingmmmm nono06:45
@wikingfeature branches06:45
@wikingdont need pr06:46
@wikingeither force push your rabase06:46
@wikingor if you are a bit hesitant06:46
@wikingthen just create a new branch and push that06:46
@wikinglike06:46
@wikingfeature/linalg_refactor206:46
@wikingas you wish06:46
@wikingonce you pushed06:46
@wikingit'll automatically run all the travis and shit06:46
OXPHOS_Just to be sure cause I don't want to mess up everything:06:48
OXPHOS_I'll work with shogun-toolbox/shogun, instead of OXPHOS/shogun?06:48
OXPHOS_wiking ^06:48
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@wikingyes06:49
@wikingdirectly with shogun-toolbox/shogun repo06:49
OXPHOS_wiking: cool thx! it should work - as long as the merging doesn't go wrong06:50
@wikingok06:50
@wikinghave u pusehd?06:50
@wiking*pushed?06:50
@wikingbut dont push it in develop06:50
@wiking:)))06:50
@wikingor master06:50
@wiking:D06:50
@wikingplz06:51
@wiking:>06:51
@wikingOXPHOS_ ^06:51
OXPHOS_wiking: nope not yet. will - or maybe in 12h06:52
OXPHOS_kk06:52
mikelingwiking: , I found most travis build pass except one, but I can't load its log https://travis-ci.org/shogun-toolbox/shogun/builds/20645287206:53
@wikingok octave is broken06:54
@wikingit's unrelated06:54
@wiking:)06:54
mikelingoh ok. :)06:54
@sukeyPull Request #3641 "add tests for KNN and fix an error in KDTree solver"  merged by vigsterkr - https://github.com/shogun-toolbox/shogun/pull/364106:55
@sukeyNew Commit "Merge pull request #3641 from MikeLing/clean_up_KNN_306:55
@sukeyadd tests for KNN and fix an error in KDTree solver" to shogun-toolbox/shogun by vigsterkr: https://github.com/shogun-toolbox/shogun/commit/9cbd1a140313ee3347ba927052c6f75988d383d306:55
mikelingwiking: thank you !06:55
mikelingOXPHOS: hello~06:55
mikelingIt's the first time we meet on irc right? ;)06:55
shogun-buildbotbuild #150 of trusty - libshogun - viennacl is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/trusty%20-%20libshogun%20-%20viennacl/builds/15006:56
OXPHOS_mikeling: yep. but I am now OXPHOS_ - I forgot to logout from lab computer07:15
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mikelingOXPHOS_: ok, I got it :D07:16
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OXPHOS_mikeling :D07:34
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@sukeyNew Commit "remove deprecated benchmark files" to shogun-toolbox/shogun by OXPHOS: https://github.com/shogun-toolbox/shogun/commit/65effed4c51b6bf01e92a9b7084b424f1c64086a07:47
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travis-ciit's OXPHOS's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: https://travis-ci.org/shogun-toolbox/shogun/builds/20649890408:45
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@HeikoSwiking: jo12:33
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@wikinghey hye13:10
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@HeikoSwiking: saw the numfocus email?13:15
@wikingyep yep13:15
@wikingdidn't want to answer13:15
@HeikoSwiking: wanted to ask if you want to join definitely?13:15
@wikingbecause you initiated13:15
@HeikoSor if I shall just go ahead13:15
@wikinglook go ahead13:15
@HeikoSyeah I thought so13:15
@HeikoScool13:15
@wikingbecause USA-UK-SG timezone13:15
@wikingis impossible13:15
@HeikoSyeah exactly13:15
@HeikoSgunnar offered to join in case we need convincing manpower13:16
@wikingjust lemme know when is it13:16
@HeikoSbut for now this is just questions13:16
@wikingand if i can13:16
@wikingi might join13:16
@HeikoScool!13:16
@wikingdepending on the time etc13:16
@HeikoSquestions for them:13:16
@HeikoSwhy exclusive, gsoc individual particupation, leaving13:16
@HeikoSanything else?13:16
@wikingwhy exclusive = what it actually means :)13:16
@HeikoSand also what they do, how much support, etc13:16
@wikinglike numpy13:17
@wikingye p yep13:17
@wikingsounds good13:17
@HeikoSwiking: yeah13:17
@HeikoSkk13:17
@HeikoScool13:17
@wikingbtw numfocus is in gsoc13:17
@wikingbut i ddin't see any of the other orgs13:17
@wikingthere13:17
@wikingseparately13:17
@wiking(that is part of numfocus13:17
@wiking)13:17
@HeikoSok I will ask about this13:17
@HeikoSwiking: btw13:18
@wikingah13:18
@HeikoSnow that this thing is merged13:18
@wikingJULIA13:18
@wikingit's separate13:18
@HeikoSok cool ill ask about that13:18
@wikinghttps://summerofcode.withgoogle.com/organizations/5642180010967040/13:18
@HeikoSwiking: what about release?13:18
@wikingHeikoS, mmm man13:18
@wikingyou know what is the great news no? :DDDD13:18
@wikingwe merged it13:18
@wikingand it came out13:18
@wikingCV is still not fucking thread safe13:18
@HeikoSha!13:18
@HeikoSgot a log?13:18
@wikingbecause man that code is using data structs13:18
@wikingthat are not threadsafe at all13:19
@wikinglog?13:19
@wikingwhat log?13:19
@wikingrun the CV multithreading unit test couple of times13:20
@wikingyou'll see :)13:20
@wikingand consequently13:20
@wikingCI/buildbot jobs13:20
@wikingsporadically fails13:20
@wiking:D13:20
@wikingthe reason it did not come out on the travis13:20
@wikingis because those are vms13:20
@wikingwith 1-2 threads13:20
@HeikoSoh yeah13:20
@wikingor vcores13:20
@HeikoSrandomly fails13:20
@wikingyeah valgrind will show u13:20
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@HeikoSwiking: jipie13:22
@HeikoSlol cant make it fail with valgrind13:22
@wikingHeikoS, but it'll detect shit13:23
@wikingvalgrind --tool=helgrind13:23
@wikingno need to make it fail13:23
@wikingit'll show u many data race conditions13:23
@HeikoSvalgrind --tool=helgrind ctest -R unit-CrossValidation_multithread13:23
@HeikoS?13:24
@wikingah13:24
@wikingno13:24
@wikingdo once13:24
@wikinga ctest -R unit-CrossValidation_multithread -V13:24
@HeikoSso run the command striaght kk13:24
@wikingand then just copy the full line of13:24
@wiking path/shogun-unit-test "--gtest_filter=....13:24
@wikingand then13:24
@wikingvalgrind --tool helgrind <paste>13:24
@HeikoSyeah got it13:24
@wikingit's gonna dump a lot of shit13:25
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@HeikoSindeed13:25
@HeikoSok then13:26
@HeikoSwiking: last thing, the flat, you saw there is airbed?13:26
@HeikoSor shall I just check out another one?13:26
@wikingmmm13:27
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@HeikoSOXPHOS: jo13:50
@HeikoSOXPHOS: so the rebase happened?13:50
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CaBawiking: any news on that? parallel-xval issue13:55
@wikingno13:55
@wikingi didn't do anything with it13:55
@wikingu wanted13:55
@wikingu broke it13:55
@wikingu fix it13:55
@wiking:)13:55
@sukeyPull Request #3666 "added check before ref_count method to avoid buildbot failure"  opened by lambday - https://github.com/shogun-toolbox/shogun/pull/366613:56
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CaBawiking: just seemed like you got some valgrind insights ;)14:02
@wikingi paassed out14:02
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iRmantou_i complied code on win10,i did not use the appveyor because it tell me in the queue,and i do that by myself.And there are some warning like error C2143: syntax error: missing“;”(before“}”) [C:\projects\shogun\\build\tests\unit\discover_gtest_tests.vcxproj]14:12
iRmantou_so i saw the code,they actually miss";"  It's my environment's problems? or this is a small trick i should check out14:15
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@wikingiRmantou_, appveyor?14:20
@wikingi've used my own win8 + MSVC 201514:20
@wikingto compile shogun locally14:20
@wikingit worked for me14:20
@wikingappveyor config just can help you14:20
iRmantou_right14:20
@wikingwhat are the commands14:20
@wikingyou should run14:20
iRmantou_i used win10+vs201214:21
@wikingmmm14:21
@wikingnever tested vs201214:21
@wikingas you can see14:21
@wikingin appveyor14:21
@wikingit's with 201514:21
@wikingand i'm suspecting14:21
iRmantou_i chang the commend i think this is the problem14:21
@wikingthat msvc2012 is missing14:21
@wikingsome compiler features14:21
@wikinglike c++1114:21
@wikingbut i have no idea14:21
@wikingagain i never tried msvc201214:21
@wikingand officially it's not supported14:21
@wikingif you can make it work14:21
@wikingwith patches14:22
iRmantou_cry=.=!14:22
@wikingjust send in a pr14:22
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@wikingiRmantou_, msvc2015 community14:23
@wikingis totally free14:23
@wikingso just install that14:23
iRmantou_it 's too slow to download vs15 in night14:23
@wikingk14:23
@wikingi'm just saying14:23
iRmantou_5555555555514:23
@wikingthen just try to fix it14:23
@wikingwith msvc14:23
iRmantou_ok14:23
iRmantou_i will try again14:24
iRmantou_thank u!14:24
@wikingwell it's just going error-by-error14:24
@wikingand try to amend the code14:24
@wikingif the msvc2012 compiler14:24
@wikingis not capable to compile some stuff14:24
@wikingthis is what i did in the first place for windows support14:24
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iRmantou_yes, i have tried for 4 hous ,but i still can't avoid to download vs2015,i just hope the net speed will faster after midnight.14:31
iRmantou_I HATE THE WALL14:31
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@wikingi wonder which wall? :O14:54
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lisitsynwiking: the big chinese one?17:00
lisitsyn:P17:00
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@HeikoSwiking:  still there17:28
@HeikoSlisitsyn: ^17:28
lisitsynyesz17:28
@HeikoStell me about the flat17:28
lisitsynI am ok17:29
@HeikoSwiking: you ok with the airbed/couch situation?17:29
@HeikoSlisitsyn: thanks17:29
lisitsynHeikoS: does it mean this guy provides airbed?17:29
@HeikoSyes17:29
@HeikoSqueen size17:30
@HeikoSso we have 5 sleeping spaces in fact17:30
lisitsynwell why worry then17:30
@HeikoSyeah I agree17:30
@HeikoSkk will do then17:30
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@wikingHeikoS, it's a function only of one thing17:32
@wiking;)17:32
@wikingas you know for me17:32
@wiking:)17:32
@HeikoSehm? Not sure I follow ...17:32
@HeikoShttp://www.kdnuggets.com/2016/11/top-20-python-machine-learning-open-source-updated.html17:35
lisitsynheh17:37
lisitsynHeikoS: how bout dropping a lot of code?17:38
@HeikoSlisitsyn: ++17:38
lisitsynI've recently dropped a shitload of code at my job17:38
lisitsynfeel so good17:38
@HeikoSlisitsyn: after tags is in17:38
@HeikoSwe can drop 1000+ lines17:38
lisitsyntrue17:38
@HeikoSso hackathon17:38
@HeikoSwill cut off things17:38
lisitsynno I mean dropping algorithms we don't test17:38
lisitsynor support17:38
@HeikoSlisitsyn: yes17:38
@HeikoSwell17:39
lisitsynnot only infrastructural stuff17:39
@HeikoSsome of the svm code is fast and state of the art17:39
@HeikoSand not tested, nor supported17:39
lisitsynto be really honest I'd drop neural nets :D17:39
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@HeikoSlisitsyn: dont know, I think the basics should be there17:39
lisitsynkeras kills the necessity17:39
@HeikoSlisitsyn: but we can do it17:39
@HeikoSyeah true17:39
@HeikoSlets drop them17:39
@HeikoSrather work on a cool framework17:39
lisitsynno reason to use shogun for neural nets17:39
lisitsynbut17:40
lisitsyn*all* the software is about training17:40
lisitsynwe should focus on applying17:40
@HeikoSyes, I think shogun should become algorithm free at some point17:40
@HeikoSand just have some very fine standard tools as plugins17:40
@HeikoSbut yeah17:40
@HeikoSlets push in that direction at some point17:40
@HeikoSI want to use it as research code framework17:41
@HeikoSfor which currently it is shit17:41
@HeikoSyou want to use it for applying, for which currently it is shit as well17:41
lisitsynHeikoS: good news is that all the software is shit for applying17:42
@HeikoSlisitsyn: yep17:42
@HeikoSlisitsyn: sooo17:42
@HeikoSGSoC project? :D17:42
@HeikoSwe could start with being able to apply our own models17:42
@HeikoSwhich mostly doesnt work17:42
lisitsynlol17:42
@HeikoSlisitsyn: I think this is a good point17:44
@HeikoSand you acutally know what you are talking about there17:44
@HeikoSso lets do that17:45
@HeikoSgood idea17:45
@HeikoSwe can keep models as plugins17:45
lisitsynHeikoS: well managing models, managing what these models stand for17:45
lisitsynis the most painful for me now17:45
lisitsynI wouldn't say there is a good solution around17:46
lisitsynHeikoS: amalgamation is the word17:46
lisitsynI think we can go for project like that17:46
@HeikoSwhat do you mean by that?17:46
lisitsynHeikoS: check amalgamation in mxnet17:46
lisitsynthey transform model into .so file17:46
lisitsynwhich you can load and call apply()17:46
lisitsynit is superoptimized this way17:47
lisitsynthe parameters may even be *on stack*17:47
lisitsynbecause they are like17:47
lisitsynfloat w_1 = 1.0;17:47
lisitsynfloat w_2 = 4.3;17:47
@HeikoSyeah get it17:47
lisitsynand return x_1*w_1 + x_2*w_217:47
@HeikoSwell for simple models17:47
@HeikoSNNs cant be on stack17:47
@HeikoSGPs neither17:47
lisitsynHeikoS: some nns are 4-5 mb17:47
lisitsynwhy no17:47
@HeikoSSVM only the weights17:47
@HeikoSsure but not the deep conv nets17:48
@HeikoSSVM needs the data17:48
lisitsynHeikoS: it is not a matter of stack17:48
@HeikoSall kernel methods do17:48
lisitsynit is about codegen17:48
@HeikoSyeah17:48
@HeikoSI mean, lets discuss this shit17:48
@HeikoSI agree actually17:48
lisitsynwell it may be like a funny project17:48
lisitsynit is just now when I formulated it this way17:49
lisitsynbut the idea of this amalgamation stuff bothers me for a long time17:49
lisitsynHeikoS: we do that at yandex since like dark ages17:49
@HeikoSyeah, lets put it to open source17:49
lisitsynHeikoS: hmm no not sure :)17:50
lisitsynHeikoS: it is just one class of algorithm17:50
lisitsynwhich predates xgboost17:50
@HeikoSI guess we should think about what we want to offer17:51
@HeikoSand to whom17:51
@HeikoSand then decide17:51
@HeikoSwho uses the framework and for what17:51
@HeikoSshould write down use cases17:51
@HeikoSand then go from there17:51
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OXPHOSHeikoS: The rebase worked18:14
OXPHOSthough we still need the multi-thread stuff in wiking18:14
@HeikoSOXPHOS: so another rebase? :)18:14
@HeikoSOXPHOS: what conflicted?18:15
OXPHOSHeikoS: trivial stuff. removed a method in SGVector etc. Basically there's no functional conflict at all18:16
@HeikoSok cool18:17
@HeikoSOXPHOS: btw I added a cmake thing to the TODO18:18
OXPHOSHeikoS: thx18:18
OXPHOSI guess the HAVE_LINALG_LIB can be removed as well.  Not sure whether I should open a new PR for it because I'm gonna change cmake18:18
@HeikoSyeah do a PR in the feature branch18:19
@HeikoSas usual18:19
@HeikoSjust kill all these switches (and clean up afterwards)18:19
@HeikoSdelete all old linalg files as well18:19
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OXPHOSHeikoS: kk18:23
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@HeikoSOXPHOS: then we are getting very close to merging this18:25
@HeikoSonce you have deleted all old files / config, and the build works, and the mutex stuff is merged, we can basically do it18:25
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@wikingOXPHOS, what stuff?19:29
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CaBawiking: ping20:10
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rainbowtiaraHi ! I'm not able to install Shogun package on ubuntu as its giving Unable to locate it.Can u plz help me in this?20:35
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@sukeyPull Request #3665 "Fix `make cookbook` when certain cookbooks are guarded"  synchronized by geektoni - https://github.com/shogun-toolbox/shogun/pull/366520:50
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@sukeyWiki page: GSoC_2017_Amalgamation created on shogun-toolbox/shogun by lisitsyn23:04
@sukeyWiki page: Google-Summer-of-Code-2017-Projects edited on shogun-toolbox/shogun by lisitsyn23:06
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@sukeyPull Request #3667 "Fix data races in CCrossValidation::evaluate_one_run()"  opened by lkuchenb - https://github.com/shogun-toolbox/shogun/pull/366723:35
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@sukeyIssue #3668 "CrossValidation_multithread unit test fails" opened by lkuchenb - https://github.com/shogun-toolbox/shogun/issues/366823:57
@sukeyIssue #3668 "CrossValidation_multithread unit test fails"- https://github.com/shogun-toolbox/shogun/issues/366823:58
--- Log closed Thu Mar 02 00:00:46 2017
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