UI kernel.
在文件 GUIKernel.h 第 24 行定义.
Public 成员函数 | |
CGUIKernel () | |
CGUIKernel (CSGInterface *interface) | |
~CGUIKernel () | |
CKernel * | get_kernel () |
bool | set_normalization (char *normalization, float64_t c=0.0, float64_t r=0.0) |
bool | set_kernel (CKernel *kern) |
bool | add_kernel (CKernel *kern, float64_t weight=1) |
bool | del_last_kernel () |
bool | init_kernel (const char *target) |
bool | init_kernel_optimization () |
bool | delete_kernel_optimization () |
bool | save_kernel (char *filename) |
bool | clean_kernel () |
bool | resize_kernel_cache (int32_t size) |
bool | set_optimization_type (char *opt_type) |
bool | precompute_subkernels () |
bool | is_initialized () |
CKernel * | create_oligo (int32_t size, int32_t k, float64_t width) |
CKernel * | create_diag (int32_t size=10, float64_t diag=1) |
CKernel * | create_const (int32_t size=10, float64_t c=1) |
CKernel * | create_custom (float64_t *kmatrix, int32_t num_feat, int32_t num_vec, bool source_is_diag, bool dest_is_diag) |
CKernel * | create_gaussianshift (int32_t size=10, float64_t width=1, int32_t max_shift=0, int32_t shift_step=1) |
CKernel * | create_sparsegaussian (int32_t size=10, float64_t width=1) |
CKernel * | create_gaussian (int32_t size=10, float64_t width=1) |
CKernel * | create_sigmoid (int32_t size=10, float64_t gamma=0.01, float64_t coef0=0) |
CKernel * | create_tppk (int32_t size, float64_t *km, int32_t rows, int32_t cols) |
CKernel * | create_sparsepoly (int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) |
CKernel * | create_poly (int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) |
CKernel * | create_wavelet (int32_t size=10, float64_t Wdilation=5.0, float64_t Wtranslation=2.0) |
CKernel * | create_localityimprovedstring (int32_t size=10, int32_t length=3, int32_t inner_degree=3, int32_t outer_degree=1, EKernelType ktype=K_LOCALITYIMPROVED) |
CKernel * | create_weighteddegreestring (int32_t size=10, int32_t order=3, int32_t max_mismatch=1, bool use_normalization=true, int32_t mkl_stepsize=1, bool block_computation=true, int32_t single_degree=-1) |
CKernel * | create_weighteddegreepositionstring (int32_t size=10, int32_t order=3, int32_t max_mismatch=1, int32_t length=0, int32_t center=0, float64_t step=1) |
CKernel * | create_weighteddegreepositionstring3 (int32_t size=10, int32_t order=3, int32_t max_mismatch=1, int32_t *shifts=NULL, int32_t length=0, int32_t mkl_stepsize=1, float64_t *position_weights=NULL) |
CKernel * | create_weighteddegreepositionstring2 (int32_t size=10, int32_t order=3, int32_t max_mismatch=1, int32_t *shifts=NULL, int32_t length=0, bool use_normalization=true) |
CKernel * | create_weighteddegreerbf (int32_t size=10, int32_t degree=1, int32_t nof_properties=1, float64_t width=1) |
CKernel * | create_spectrummismatchrbf (int32_t size=10, float64_t *AA_matrix=NULL, int32_t nr=128, int32_t nc=128, int32_t max_mismatch=1, int32_t degree=1, float64_t width=1) |
CKernel * | create_localalignmentstring (int32_t size=10) |
CKernel * | create_fixeddegreestring (int32_t size=10, int32_t d=3) |
CKernel * | create_chi2 (int32_t size=10, float64_t width=1) |
CKernel * | create_commstring (int32_t size=10, bool use_sign=false, char *norm_str=NULL, EKernelType ktype=K_WEIGHTEDCOMMWORDSTRING) |
CKernel * | create_matchwordstring (int32_t size=10, int32_t d=3, bool normalize=true) |
CKernel * | create_polymatchstring (int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) |
CKernel * | create_polymatchwordstring (int32_t size=10, int32_t degree=2, bool inhomogene=false, bool normalize=true) |
CKernel * | create_salzbergword (int32_t size=10) |
CKernel * | create_histogramword (int32_t size=10) |
CKernel * | create_linearbyte (int32_t size=10, float64_t scale=-1) |
CKernel * | create_linearword (int32_t size=10, float64_t scale=-1) |
CKernel * | create_linearstring (int32_t size=10, float64_t scale=-1) |
CKernel * | create_linear (int32_t size=10, float64_t scale=-1) |
CKernel * | create_sparselinear (int32_t size=10, float64_t scale=-1) |
CKernel * | create_distance (int32_t size=10, float64_t width=1) |
CKernel * | create_combined (int32_t size=10, bool append_subkernel_weights=false) |
virtual const char * | get_name () const |
virtual CSGObject * | shallow_copy () const |
virtual CSGObject * | deep_copy () const |
virtual bool | is_generic (EPrimitiveType *generic) const |
template<class T > | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
template<> | |
void | set_generic () |
void | unset_generic () |
virtual void | print_serializable (const char *prefix="") |
virtual bool | save_serializable (CSerializableFile *file, const char *prefix="") |
virtual bool | load_serializable (CSerializableFile *file, const char *prefix="") |
void | set_global_io (SGIO *io) |
SGIO * | get_global_io () |
void | set_global_parallel (Parallel *parallel) |
Parallel * | get_global_parallel () |
void | set_global_version (Version *version) |
Version * | get_global_version () |
SGStringList< char > | get_modelsel_names () |
void | print_modsel_params () |
char * | get_modsel_param_descr (const char *param_name) |
index_t | get_modsel_param_index (const char *param_name) |
void | build_gradient_parameter_dictionary (CMap< TParameter *, CSGObject * > *dict) |
virtual void | update_parameter_hash () |
virtual bool | parameter_hash_changed () |
virtual bool | equals (CSGObject *other, float64_t accuracy=0.0, bool tolerant=false) |
virtual CSGObject * | clone () |
Public 属性 | |
SGIO * | io |
Parallel * | parallel |
Version * | version |
Parameter * | m_parameters |
Parameter * | m_model_selection_parameters |
Parameter * | m_gradient_parameters |
uint32_t | m_hash |
Protected 成员函数 | |
virtual void | load_serializable_pre () throw (ShogunException) |
virtual void | load_serializable_post () throw (ShogunException) |
virtual void | save_serializable_pre () throw (ShogunException) |
virtual void | save_serializable_post () throw (ShogunException) |
Protected 属性 | |
CKernel * | kernel |
CSGInterface * | ui |
bool | initialized |
CGUIKernel | ( | ) |
constructor
在文件 GUIKernel.h 第 28 行定义.
CGUIKernel | ( | CSGInterface * | interface | ) |
~CGUIKernel | ( | ) |
destructor
在文件 GUIKernel.cpp 第 71 行定义.
add kernel to a Combined kernel, creating one if necessary
在文件 GUIKernel.cpp 第 861 行定义.
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inherited |
Builds a dictionary of all parameters in SGObject as well of those of SGObjects that are parameters of this object. Dictionary maps parameters to the objects that own them.
dict | dictionary of parameters to be built. |
在文件 SGObject.cpp 第 597 行定义.
bool clean_kernel | ( | ) |
clean/r kernel
在文件 GUIKernel.cpp 第 914 行定义.
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virtualinherited |
Creates a clone of the current object. This is done via recursively traversing all parameters, which corresponds to a deep copy. Calling equals on the cloned object always returns true although none of the memory of both objects overlaps.
在文件 SGObject.cpp 第 714 行定义.
create a new Chi2 kernel
在文件 GUIKernel.cpp 第 426 行定义.
CKernel * create_combined | ( | int32_t | size = 10 , |
bool | append_subkernel_weights = false |
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) |
create a new Combined kernel
在文件 GUIKernel.cpp 第 627 行定义.
CKernel * create_commstring | ( | int32_t | size = 10 , |
bool | use_sign = false , |
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char * | norm_str = NULL , |
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EKernelType | ktype = K_WEIGHTEDCOMMWORDSTRING |
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) |
create a new WeightedCommWord/CommWord/CommULongString kernel
在文件 GUIKernel.cpp 第 437 行定义.
create a new Const kernel
在文件 GUIKernel.cpp 第 100 行定义.
CKernel * create_custom | ( | float64_t * | kmatrix, |
int32_t | num_feat, | ||
int32_t | num_vec, | ||
bool | source_is_diag, | ||
bool | dest_is_diag | ||
) |
create a new Custom kernel
在文件 GUIKernel.cpp 第 113 行定义.
create a new Diag kernel
在文件 GUIKernel.cpp 第 89 行定义.
create a new Distance kernel
在文件 GUIKernel.cpp 第 612 行定义.
CKernel * create_fixeddegreestring | ( | int32_t | size = 10 , |
int32_t | d = 3 |
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) |
create a new FixedDegreeString kernel
在文件 GUIKernel.cpp 第 415 行定义.
create a new Gaussian kernel
在文件 GUIKernel.cpp 第 157 行定义.
CKernel * create_gaussianshift | ( | int32_t | size = 10 , |
float64_t | width = 1 , |
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int32_t | max_shift = 0 , |
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int32_t | shift_step = 1 |
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) |
create a new GaussianShift kernel
在文件 GUIKernel.cpp 第 134 行定义.
CKernel * create_histogramword | ( | int32_t | size = 10 | ) |
create a new HistogramWord kernel
在文件 GUIKernel.cpp 第 530 行定义.
create a new Linear kernel
在文件 GUIKernel.cpp 第 578 行定义.
create a new LinearByte kernel
在文件 GUIKernel.cpp 第 546 行定义.
create a new LinearString kernel
在文件 GUIKernel.cpp 第 566 行定义.
create a new LinearWord kernel
在文件 GUIKernel.cpp 第 556 行定义.
CKernel * create_localalignmentstring | ( | int32_t | size = 10 | ) |
create a new LocalAlignmentString kernel
在文件 GUIKernel.cpp 第 404 行定义.
CKernel * create_localityimprovedstring | ( | int32_t | size = 10 , |
int32_t | length = 3 , |
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int32_t | inner_degree = 3 , |
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int32_t | outer_degree = 1 , |
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EKernelType | ktype = K_LOCALITYIMPROVED |
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) |
create a new (Simple)LocalityImprovedString kernel
在文件 GUIKernel.cpp 第 212 行定义.
CKernel * create_matchwordstring | ( | int32_t | size = 10 , |
int32_t | d = 3 , |
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bool | normalize = true |
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) |
create a new MatchWordString kernel
在文件 GUIKernel.cpp 第 469 行定义.
create Oligo kernel
在文件 GUIKernel.cpp 第 81 行定义.
CKernel * create_poly | ( | int32_t | size = 10 , |
int32_t | degree = 2 , |
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bool | inhomogene = false , |
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bool | normalize = true |
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) |
create a new Poly kernel
在文件 GUIKernel.cpp 第 201 行定义.
CKernel * create_polymatchstring | ( | int32_t | size = 10 , |
int32_t | degree = 2 , |
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bool | inhomogene = false , |
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bool | normalize = true |
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) |
create a new PolyMatchString kernel
在文件 GUIKernel.cpp 第 480 行定义.
CKernel * create_polymatchwordstring | ( | int32_t | size = 10 , |
int32_t | degree = 2 , |
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bool | inhomogene = false , |
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bool | normalize = true |
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) |
create a new PolyMatchWordString kernel
在文件 GUIKernel.cpp 第 491 行定义.
CKernel * create_salzbergword | ( | int32_t | size = 10 | ) |
create a new SalzbergWord kernel
在文件 GUIKernel.cpp 第 502 行定义.
create a new Sigmoid kernel
在文件 GUIKernel.cpp 第 168 行定义.
create a new SparseGaussian kernel
在文件 GUIKernel.cpp 第 146 行定义.
create a new SparseLinear kernel
在文件 GUIKernel.cpp 第 589 行定义.
CKernel * create_sparsepoly | ( | int32_t | size = 10 , |
int32_t | degree = 2 , |
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bool | inhomogene = false , |
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bool | normalize = true |
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) |
create a new SparsePoly kernel
在文件 GUIKernel.cpp 第 190 行定义.
CKernel * create_spectrummismatchrbf | ( | int32_t | size = 10 , |
float64_t * | AA_matrix = NULL , |
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int32_t | nr = 128 , |
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int32_t | nc = 128 , |
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int32_t | max_mismatch = 1 , |
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int32_t | degree = 1 , |
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float64_t | width = 1 |
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) |
create a new SpectrumMismatchRBF kernel
在文件 GUIKernel.cpp 第 390 行定义.
create a new TPP kernel
在文件 GUIKernel.cpp 第 600 行定义.
CKernel * create_wavelet | ( | int32_t | size = 10 , |
float64_t | Wdilation = 5.0 , |
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float64_t | Wtranslation = 2.0 |
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) |
create new Wavelet kernel
在文件 GUIKernel.cpp 第 179 行定义.
CKernel * create_weighteddegreepositionstring | ( | int32_t | size = 10 , |
int32_t | order = 3 , |
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int32_t | max_mismatch = 1 , |
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int32_t | length = 0 , |
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int32_t | center = 0 , |
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float64_t | step = 1 |
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) |
create a new WeightedDegreePositionString kernel
在文件 GUIKernel.cpp 第 276 行定义.
CKernel * create_weighteddegreepositionstring2 | ( | int32_t | size = 10 , |
int32_t | order = 3 , |
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int32_t | max_mismatch = 1 , |
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int32_t * | shifts = NULL , |
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int32_t | length = 0 , |
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bool | use_normalization = true |
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) |
create a new WeightedDegreePositionString2
在文件 GUIKernel.cpp 第 332 行定义.
CKernel * create_weighteddegreepositionstring3 | ( | int32_t | size = 10 , |
int32_t | order = 3 , |
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int32_t | max_mismatch = 1 , |
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int32_t * | shifts = NULL , |
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int32_t | length = 0 , |
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int32_t | mkl_stepsize = 1 , |
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float64_t * | position_weights = NULL |
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) |
create a new WeightedDegreePositionString3
在文件 GUIKernel.cpp 第 309 行定义.
CKernel * create_weighteddegreerbf | ( | int32_t | size = 10 , |
int32_t | degree = 1 , |
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int32_t | nof_properties = 1 , |
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float64_t | width = 1 |
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) |
create a new WeightedDegreeRBF kernel
在文件 GUIKernel.cpp 第 379 行定义.
CKernel * create_weighteddegreestring | ( | int32_t | size = 10 , |
int32_t | order = 3 , |
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int32_t | max_mismatch = 1 , |
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bool | use_normalization = true , |
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int32_t | mkl_stepsize = 1 , |
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bool | block_computation = true , |
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int32_t | single_degree = -1 |
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) |
create a new WeightedDegreeString kernel
在文件 GUIKernel.cpp 第 237 行定义.
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virtualinherited |
A deep copy. All the instance variables will also be copied.
在文件 SGObject.cpp 第 198 行定义.
bool del_last_kernel | ( | ) |
delete last kernel in combined kernel
在文件 GUIKernel.cpp 第 897 行定义.
bool delete_kernel_optimization | ( | ) |
delete kernel optimization
在文件 GUIKernel.cpp 第 748 行定义.
Recursively compares the current SGObject to another one. Compares all registered numerical parameters, recursion upon complex (SGObject) parameters. Does not compare pointers!
May be overwritten but please do with care! Should not be necessary in most cases.
other | object to compare with |
accuracy | accuracy to use for comparison (optional) |
tolerant | allows linient check on float equality (within accuracy) |
在文件 SGObject.cpp 第 618 行定义.
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inherited |
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inherited |
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inherited |
CKernel * get_kernel | ( | ) |
get active kernel
在文件 GUIKernel.cpp 第 76 行定义.
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inherited |
在文件 SGObject.cpp 第 498 行定义.
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inherited |
Returns description of a given parameter string, if it exists. SG_ERROR otherwise
param_name | name of the parameter |
在文件 SGObject.cpp 第 522 行定义.
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inherited |
Returns index of model selection parameter with provided index
param_name | name of model selection parameter |
在文件 SGObject.cpp 第 535 行定义.
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virtual |
bool init_kernel | ( | const char * | target | ) |
initialize kernel
在文件 GUIKernel.cpp 第 757 行定义.
bool init_kernel_optimization | ( | ) |
initialize kernel optimization
在文件 GUIKernel.cpp 第 715 行定义.
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virtualinherited |
If the SGSerializable is a class template then TRUE will be returned and GENERIC is set to the type of the generic.
generic | set to the type of the generic if returning TRUE |
在文件 SGObject.cpp 第 296 行定义.
bool is_initialized | ( | ) |
check if kernel is initialized
在文件 GUIKernel.h 第 68 行定义.
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virtualinherited |
Load this object from file. If it will fail (returning FALSE) then this object will contain inconsistent data and should not be used!
file | where to load from |
prefix | prefix for members |
在文件 SGObject.cpp 第 369 行定义.
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protectedvirtualinherited |
Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_POST is called.
ShogunException | will be thrown if an error occurs. |
被 CKernel, CWeightedDegreePositionStringKernel, CList, CAlphabet, CLinearHMM, CGaussianKernel, CInverseMultiQuadricKernel, CCircularKernel , 以及 CExponentialKernel 重载.
在文件 SGObject.cpp 第 426 行定义.
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protectedvirtualinherited |
Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_PRE is called.
ShogunException | will be thrown if an error occurs. |
被 CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool > , 以及 CDynamicObjectArray 重载.
在文件 SGObject.cpp 第 421 行定义.
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virtualinherited |
在文件 SGObject.cpp 第 262 行定义.
bool precompute_subkernels | ( | ) |
precompute subkernels
在文件 GUIKernel.cpp 第 960 行定义.
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inherited |
prints all parameter registered for model selection and their type
在文件 SGObject.cpp 第 474 行定义.
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virtualinherited |
bool resize_kernel_cache | ( | int32_t | size | ) |
resize kernel cache
在文件 GUIKernel.cpp 第 922 行定义.
bool save_kernel | ( | char * | filename | ) |
save kernel (matrix) to file
在文件 GUIKernel.cpp 第 837 行定义.
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virtualinherited |
Save this object to file.
file | where to save the object; will be closed during returning if PREFIX is an empty string. |
prefix | prefix for members |
在文件 SGObject.cpp 第 314 行定义.
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protectedvirtualinherited |
Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_POST is called.
ShogunException | will be thrown if an error occurs. |
被 CKernel 重载.
在文件 SGObject.cpp 第 436 行定义.
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protectedvirtualinherited |
Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_PRE is called.
ShogunException | will be thrown if an error occurs. |
被 CKernel, CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool > , 以及 CDynamicObjectArray 重载.
在文件 SGObject.cpp 第 431 行定义.
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inherited |
在文件 SGObject.cpp 第 41 行定义.
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inherited |
在文件 SGObject.cpp 第 46 行定义.
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inherited |
在文件 SGObject.cpp 第 51 行定义.
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inherited |
在文件 SGObject.cpp 第 56 行定义.
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inherited |
在文件 SGObject.cpp 第 61 行定义.
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inherited |
在文件 SGObject.cpp 第 66 行定义.
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inherited |
在文件 SGObject.cpp 第 71 行定义.
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inherited |
在文件 SGObject.cpp 第 76 行定义.
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inherited |
在文件 SGObject.cpp 第 81 行定义.
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inherited |
在文件 SGObject.cpp 第 86 行定义.
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inherited |
在文件 SGObject.cpp 第 91 行定义.
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inherited |
在文件 SGObject.cpp 第 96 行定义.
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inherited |
在文件 SGObject.cpp 第 101 行定义.
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inherited |
在文件 SGObject.cpp 第 106 行定义.
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inherited |
在文件 SGObject.cpp 第 111 行定义.
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inherited |
set generic type to T
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inherited |
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inherited |
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inherited |
bool set_kernel | ( | CKernel * | kern | ) |
set active kernel
在文件 GUIKernel.cpp 第 699 行定义.
set normalization
在文件 GUIKernel.cpp 第 639 行定义.
bool set_optimization_type | ( | char * | opt_type | ) |
set optimization type
在文件 GUIKernel.cpp 第 932 行定义.
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virtualinherited |
A shallow copy. All the SGObject instance variables will be simply assigned and SG_REF-ed.
被 CGaussianKernel 重载.
在文件 SGObject.cpp 第 192 行定义.
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inherited |
unset generic type
this has to be called in classes specializing a template class
在文件 SGObject.cpp 第 303 行定义.
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virtualinherited |
Updates the hash of current parameter combination
在文件 SGObject.cpp 第 248 行定义.
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protected |
initialized
在文件 GUIKernel.h 第 180 行定义.
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inherited |
io
在文件 SGObject.h 第 369 行定义.
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protected |
kernel
在文件 GUIKernel.h 第 176 行定义.
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inherited |
parameters wrt which we can compute gradients
在文件 SGObject.h 第 384 行定义.
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inherited |
Hash of parameter values
在文件 SGObject.h 第 387 行定义.
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inherited |
model selection parameters
在文件 SGObject.h 第 381 行定义.
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inherited |
parameters
在文件 SGObject.h 第 378 行定义.
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inherited |
parallel
在文件 SGObject.h 第 372 行定义.
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protected |
ui
在文件 GUIKernel.h 第 178 行定义.
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inherited |
version
在文件 SGObject.h 第 375 行定义.