Sparse Spatial Sample String Kernel by Pavel Kuksa <pkuksa@cs.rutgers.edu> and Vladimir Pavlovic <vladimir@cs.rutgers.edu>
Definition at line 30 of file SparseSpatialSampleStringKernel.h.
Public Member Functions | |
CSparseSpatialSampleStringKernel () | |
CSparseSpatialSampleStringKernel (CStringFeatures< char > *l, CStringFeatures< char > *r) | |
virtual | ~CSparseSpatialSampleStringKernel () |
virtual bool | init (CFeatures *l, CFeatures *r) |
virtual void | cleanup () |
virtual EKernelType | get_kernel_type () |
void | set_d (int32_t max_distance) |
int32_t | get_d () |
void | set_t (int32_t sequence_length) |
int32_t | get_t () |
virtual const char * | get_name () const |
Protected Member Functions | |
virtual float64_t | compute (int32_t idx_a, int32_t idx_b) |
SSKFeatures * | extractTriple (int **S, int *len, int nStr, int d1, int d2) |
SSKFeatures * | extractDouble (int **S, int *len, int nStr, int d1) |
void | compute_double (int32_t idx_a, int32_t idx_b) |
void | compute_triple (int32_t idx_a, int32_t idx_b) |
int * | cntsrtna (int *sx, int k, int r, int na) |
void | countAndUpdate (int *outK, int *sx, int *g, int k, int r, int nStr) |
Protected Attributes | |
int32_t | t |
int32_t | d |
bool | isVerbose |
constructor
Definition at line 23 of file SparseSpatialSampleStringKernel.cpp.
CSparseSpatialSampleStringKernel | ( | CStringFeatures< char > * | l, | |
CStringFeatures< char > * | r | |||
) |
constructor
l | features of left-hand side | |
r | features of right-hand side |
Definition at line 28 of file SparseSpatialSampleStringKernel.cpp.
~CSparseSpatialSampleStringKernel | ( | ) | [virtual] |
Definition at line 45 of file SparseSpatialSampleStringKernel.cpp.
void cleanup | ( | ) | [virtual] |
clean up kernel
Reimplemented from CKernel.
Definition at line 40 of file SparseSpatialSampleStringKernel.cpp.
int * cntsrtna | ( | int * | sx, | |
int | k, | |||
int | r, | |||
int | na | |||
) | [protected] |
Definition at line 337 of file SparseSpatialSampleStringKernel.cpp.
float64_t compute | ( | int32_t | idx_a, | |
int32_t | idx_b | |||
) | [protected, virtual] |
compute kernel function for features a and b idx_{a,b} denote the index of the feature vectors in the corresponding feature object
idx_a | index a | |
idx_b | index b |
Implements CKernel.
Definition at line 372 of file SparseSpatialSampleStringKernel.cpp.
void compute_double | ( | int32_t | idx_a, | |
int32_t | idx_b | |||
) | [protected] |
Definition at line 125 of file SparseSpatialSampleStringKernel.cpp.
void compute_triple | ( | int32_t | idx_a, | |
int32_t | idx_b | |||
) | [protected] |
Definition at line 191 of file SparseSpatialSampleStringKernel.cpp.
void countAndUpdate | ( | int * | outK, | |
int * | sx, | |||
int * | g, | |||
int | k, | |||
int | r, | |||
int | nStr | |||
) | [protected] |
Definition at line 268 of file SparseSpatialSampleStringKernel.cpp.
SSKFeatures * extractDouble | ( | int ** | S, | |
int * | len, | |||
int | nStr, | |||
int | d1 | |||
) | [protected] |
Definition at line 87 of file SparseSpatialSampleStringKernel.cpp.
SSKFeatures * extractTriple | ( | int ** | S, | |
int * | len, | |||
int | nStr, | |||
int | d1, | |||
int | d2 | |||
) | [protected] |
Definition at line 49 of file SparseSpatialSampleStringKernel.cpp.
int32_t get_d | ( | ) |
Definition at line 72 of file SparseSpatialSampleStringKernel.h.
virtual EKernelType get_kernel_type | ( | ) | [virtual] |
return what type of kernel we are
Implements CStringKernel< char >.
Definition at line 61 of file SparseSpatialSampleStringKernel.h.
virtual const char* get_name | ( | void | ) | const [virtual] |
return the kernel's name
Reimplemented from CStringKernel< char >.
Definition at line 92 of file SparseSpatialSampleStringKernel.h.
int32_t get_t | ( | ) |
Definition at line 83 of file SparseSpatialSampleStringKernel.h.
initialize kernel
l | features of left-hand side | |
r | features of right-hand side |
Reimplemented from CStringKernel< char >.
Definition at line 34 of file SparseSpatialSampleStringKernel.cpp.
void set_d | ( | int32_t | max_distance | ) |
Definition at line 66 of file SparseSpatialSampleStringKernel.h.
void set_t | ( | int32_t | sequence_length | ) |
Definition at line 77 of file SparseSpatialSampleStringKernel.h.
int32_t d [protected] |
parameter d of the SSSK denotes maximum allowed distance between words in the sequence
Definition at line 119 of file SparseSpatialSampleStringKernel.h.
bool isVerbose [protected] |
Definition at line 120 of file SparseSpatialSampleStringKernel.h.
int32_t t [protected] |
parameter t of the SSSK denotes how many words are considered in the sequence (valid are only 2 or 3)
Definition at line 115 of file SparseSpatialSampleStringKernel.h.