Chi2Kernel.cpp

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/*
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * Written (W) 1999-2009 Soeren Sonnenburg
 * Copyright (C) 1999-2009 Fraunhofer Institute FIRST and Max-Planck-Society
 */

#include <shogun/lib/common.h>
#include <shogun/kernel/Chi2Kernel.h>
#include <shogun/features/Features.h>
#include <shogun/io/SGIO.h>

using namespace shogun;

void
CChi2Kernel::init()
{
    SG_ADD(&width, "width", "Kernel width.", MS_AVAILABLE);
}

CChi2Kernel::CChi2Kernel()
: CDotKernel(0), width(0)
{
    init();
}

CChi2Kernel::CChi2Kernel(int32_t size, float64_t w)
: CDotKernel(size), width(w)
{
    init();
}

CChi2Kernel::CChi2Kernel(
    CDenseFeatures<float64_t>* l, CDenseFeatures<float64_t>* r, float64_t w, int32_t size)
: CDotKernel(size), width(w)
{
    init();
    init(l,r);
}

CChi2Kernel::~CChi2Kernel()
{
    cleanup();
}

bool CChi2Kernel::init(CFeatures* l, CFeatures* r)
{
    bool result=CDotKernel::init(l,r);
    init_normalizer();
    return result;
}

float64_t CChi2Kernel::compute(int32_t idx_a, int32_t idx_b)
{
    int32_t alen, blen;
    bool afree, bfree;

    float64_t* avec=
        ((CDenseFeatures<float64_t>*) lhs)->get_feature_vector(idx_a, alen, afree);
    float64_t* bvec=
        ((CDenseFeatures<float64_t>*) rhs)->get_feature_vector(idx_b, blen, bfree);
    ASSERT(alen==blen)

    float64_t result=0;
    for (int32_t i=0; i<alen; i++)
    {
        float64_t n=avec[i]-bvec[i];
        float64_t d=avec[i]+bvec[i];
        if (d!=0)
            result+=n*n/d;
    }

    result=exp(-result/width);

    ((CDenseFeatures<float64_t>*) lhs)->free_feature_vector(avec, idx_a, afree);
    ((CDenseFeatures<float64_t>*) rhs)->free_feature_vector(bvec, idx_b, bfree);

    return result;
}

float64_t CChi2Kernel::get_width()
{
    return width;
}

CChi2Kernel* CChi2Kernel::obtain_from_generic(CKernel* kernel)
{
    if (kernel->get_kernel_type()!=K_CHI2)
    {
        SG_SERROR("Provided kernel is "
                "not of type CChi2Kernel!\n");
    }

    /* since an additional reference is returned */
    SG_REF(kernel);
    return (CChi2Kernel*)kernel;
}