DimensionReductionPreprocessor.cpp

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#include <shogun/preprocessor/DimensionReductionPreprocessor.h>
#include <shogun/converter/EmbeddingConverter.h>
#include <shogun/kernel/LinearKernel.h>
#include <shogun/distance/EuclideanDistance.h>

using namespace shogun;

namespace shogun
{
CDimensionReductionPreprocessor::CDimensionReductionPreprocessor()
: CDensePreprocessor<float64_t>()
{
    m_target_dim = 1;
    m_distance = new CEuclideanDistance();
    m_kernel = new CLinearKernel();
    m_converter = NULL;

    initialize_parameters();
}

CDimensionReductionPreprocessor::CDimensionReductionPreprocessor(CEmbeddingConverter* converter)
: CDensePreprocessor<float64_t>()
{
    SG_REF(converter);
    m_target_dim = 1;
    m_distance = new CEuclideanDistance();
    m_kernel = new CLinearKernel();
    m_converter = converter;

    initialize_parameters();
}

CDimensionReductionPreprocessor::~CDimensionReductionPreprocessor()
{
    SG_UNREF(m_distance);
    SG_UNREF(m_kernel);
    SG_UNREF(m_converter);
}

SGMatrix<float64_t> CDimensionReductionPreprocessor::apply_to_feature_matrix(CFeatures* features)
{
    if (m_converter)
    {
        m_converter->set_target_dim(m_target_dim);
        CDenseFeatures<float64_t>* embedding = m_converter->embed(features);
        SGMatrix<float64_t> embedding_feature_matrix = embedding->steal_feature_matrix();
        ((CDenseFeatures<float64_t>*)features)->set_feature_matrix(embedding_feature_matrix);
        delete embedding;
        return embedding_feature_matrix;
    }
    else
    {
        SG_WARNING("Converter to process was not set.\n")
        return ((CDenseFeatures<float64_t>*)features)->get_feature_matrix();
    }
}

bool CDimensionReductionPreprocessor::init(CFeatures* data)
{
    return true;
}

void CDimensionReductionPreprocessor::cleanup()
{

}

EPreprocessorType CDimensionReductionPreprocessor::get_type() const { return P_DIMENSIONREDUCTIONPREPROCESSOR; };

void CDimensionReductionPreprocessor::set_target_dim(int32_t dim)
{
    ASSERT(dim>0)
    m_target_dim = dim;
}

int32_t CDimensionReductionPreprocessor::get_target_dim() const
{
    return m_target_dim;
}

void CDimensionReductionPreprocessor::set_distance(CDistance* distance)
{
    SG_REF(distance);
    SG_UNREF(m_distance);
    m_distance = distance;
}

CDistance* CDimensionReductionPreprocessor::get_distance() const
{
    SG_REF(m_distance);
    return m_distance;
}

void CDimensionReductionPreprocessor::set_kernel(CKernel* kernel)
{
    SG_REF(kernel);
    SG_UNREF(m_kernel);
    m_kernel = kernel;
}

CKernel* CDimensionReductionPreprocessor::get_kernel() const
{
    SG_REF(m_kernel);
    return m_kernel;
}

void CDimensionReductionPreprocessor::initialize_parameters()
{
    SG_ADD((CSGObject**)&m_converter, "converter",
                      "embedding converter used to apply to data", MS_AVAILABLE);
    SG_ADD(&m_target_dim, "target_dim",
                      "target dimensionality of preprocessor", MS_AVAILABLE);
    SG_ADD((CSGObject**)&m_distance, "distance",
                      "distance to be used for embedding", MS_AVAILABLE);
    SG_ADD((CSGObject**)&m_kernel, "kernel",
                      "kernel to be used for embedding", MS_AVAILABLE);
}
}