Distribution.cpp

Go to the documentation of this file.

/*
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * Written (W) 1999-2009 Soeren Sonnenburg
 * Written (W) 2014 Parijat Mazumdar
 * Copyright (C) 1999-2009 Fraunhofer Institute FIRST and Max-Planck-Society
 */

#include <shogun/distributions/Distribution.h>
#include <shogun/mathematics/Math.h>

using namespace shogun;

CDistribution::CDistribution()
: CSGObject(), features(NULL), pseudo_count(1e-10)
{
}


CDistribution::~CDistribution()
{
    SG_UNREF(features);
}

float64_t CDistribution::get_log_likelihood_sample()
{
    ASSERT(features)

    float64_t sum=0;
    for (int32_t i=0; i<features->get_num_vectors(); i++)
        sum+=get_log_likelihood_example(i);

    return sum/features->get_num_vectors();
}

SGVector<float64_t> CDistribution::get_log_likelihood()
{
    ASSERT(features)

    int32_t num=features->get_num_vectors();
    float64_t* vec=SG_MALLOC(float64_t, num);

    for (int32_t i=0; i<num; i++)
        vec[i]=get_log_likelihood_example(i);

    return SGVector<float64_t>(vec,num);
}

int32_t CDistribution::get_num_relevant_model_parameters()
{
    int32_t total_num=get_num_model_parameters();
    int32_t num=0;

    for (int32_t i=0; i<total_num; i++)
    {
        if (get_log_model_parameter(i)>CMath::ALMOST_NEG_INFTY)
            num++;
    }
    return num;
}

SGVector<float64_t> CDistribution::get_likelihood_for_all_examples()
{
    ASSERT(features);
    int32_t num=features->get_num_vectors();
    ASSERT(num>0);

    SGVector<float64_t> result=SGVector<float64_t>(num);
    for (int32_t i=0; i<num; i++)
        result[i]=get_likelihood_example(i);

    return result;
}

float64_t CDistribution::update_params_em(float64_t* alpha_k, int32_t len)
{
    SG_WARNING("Not implemented in this class. This class cannot be used for Mixture models.\n")
    SG_NOTIMPLEMENTED
    return -1;
}

CDistribution* CDistribution::obtain_from_generic(CSGObject* object)
{
    if (!object)
        return NULL;

    CDistribution* casted=dynamic_cast<CDistribution*>(object);
    if (!casted)
        return NULL;

    return casted;
}