| --- Log opened Thu Dec 12 00:00:03 2013 | ||
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| shogun-buildbot | build #645 of nightly_default is complete: Failure [failed notebooks] Build details are at http://buildbot.shogun-toolbox.org/builders/nightly_default/builds/645 | 04:19 |
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| @iglesiasg | Hi besser82 | 15:18 |
| besser82 | iglesiasg: Hi Fernando! | 15:19 |
| @iglesiasg | besser82, Did you see travis complains about some wrong compilation option? | 15:19 |
| besser82 | iglesiasg: Not yet... where? | 15:19 |
| @iglesiasg | besser82, https://travis-ci.org/shogun-toolbox/shogun/jobs/15277382#L1671 | 15:20 |
| @iglesiasg | Although I don't know yet why it is happening | 15:21 |
| besser82 | iglesiasg: just because that checkout doesn't have c++11-detection in it ;) | 15:22 |
| besser82 | iglesiasg: nothing problematic ;) | 15:22 |
| @iglesiasg | besser82, what does it mean that the checkout doesn't have the c++11 detection? | 15:23 |
| besser82 | iglesiasg: cmake actually doesn't check if the compiler is aware of `std=c++11` | 15:23 |
| besser82 | iglesiasg: it currently just injects that flag... | 15:23 |
| @iglesiasg | aham I understand | 15:24 |
| besser82 | iglesiasg: and gcc 4.6 - afaik - has no std=c++11, but std=c++0x | 15:24 |
| @iglesiasg | besser82, yes, I think so too | 15:24 |
| besser82 | iglesiasg: which in fact now is deprecated and became c++11 | 15:25 |
| besser82 | iglesiasg: i just need to add that check ;) | 15:25 |
| @iglesiasg | damn ubuntu LTS :D | 15:25 |
| @iglesiasg | besser82, that sounds good | 15:26 |
| @iglesiasg | let us try to get Travis back to life | 15:26 |
| @iglesiasg | this one is probably the tiniest of the problems it currently has though | 15:26 |
| besser82 | iglesiasg: that's just my feature branch ;) | 15:26 |
| @iglesiasg | besser82, aaah true! | 15:26 |
| @iglesiasg | I am such an idiot, didn't realize of that lol | 15:26 |
| besser82 | iglesiasg: np ;) | 15:26 |
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| shogun-notifier- | shogun: Fernando Iglesias :develop * 03f612d / doc/pages/Installation.mainpage: https://github.com/shogun-toolbox/shogun/commit/03f612deb0a7a8ffe764cd9030720c196329ba75 | 16:08 |
| shogun-notifier- | shogun: Tiny fix for typo in Doxygen | 16:08 |
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| Saurabh7 | hello,i was looking to contribute to shogun as i am curious abt machine learning | 16:15 |
| Saurabh7 | , is there sort of any beginner task out there? or any suggestion? | 16:16 |
| bb | was trying to install shogun on ubuntu and get the following error message after sudo make command | 16:17 |
| bb | [ 84%] copying SWIG files [ 84%] Built target python_modular_src [ 84%] Built target python_doxy2swig [ 84%] Built target _python_modular Linking CXX executable balanced_conditional_probability_tree ../../../src/shogun/libshogun.so.14.0: undefined reference to `H5T_NATIVE_INT16_g' ../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Sselect_elements' ../../../src/shogun/libshogun.so.14.0: undefined reference to `H5Dread' ../. | 16:17 |
| bb | collect2: ld returned 1 exit status make[2]: *** [examples/undocumented/libshogun/balanced_conditional_probability_tree] Error 1 make[1]: *** [examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all] Error 2 make: *** [all] Error 2 | 16:18 |
| shogun-buildbot | build #2015 of bsd1 - libshogun is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/bsd1%20-%20libshogun/builds/2015 | 16:20 |
| @iglesiasg | Saurabh7, there should be some initiation tasks in the issues in GitHub | 16:27 |
| @iglesiasg | bb, what did you do before that? | 16:29 |
| @iglesiasg | bb, why compiling with make btw? | 16:29 |
| @iglesiasg | bb, oops sorry, compiling with sudo, i.e. sudo make | 16:30 |
| besser82 | iglesiasg: the problem seems to be about the ldflags.... | 16:30 |
| @iglesiasg | besser82, do you know if thos H5 are related to HDF5?? | 16:31 |
| besser82 | iglesiasg: Yes, had the same probs on recent FC20 ;) | 16:31 |
| @iglesiasg | well maybe try then deactivating HDF5 if you are not going to use it bb :) | 16:32 |
| besser82 | iglesiasg: you can usually trust me, when it comes to compiler-stuff ;) | 16:32 |
| besser82 | iglesiasg: he already pinged me in a 1:1 and I told him to adjust his LDFLAGS ;) | 16:33 |
| besser82 | iglesiasg: like export LDFLAGS="-lhdf5" | 16:33 |
| @iglesiasg | aaah all right then | 16:33 |
| @iglesiasg | good good | 16:33 |
| Saurabh7 | iglesiasg, yes i had a look but couldnt pick one | 16:34 |
| bb | iglesiasg thanks besser82 is helping me | 16:35 |
| @iglesiasg | Saurabh7, You are welcome to do all then ;) | 16:35 |
| besser82 | iglesiasg, Saurabh7: only peole with push-access can assign issues to them ;) | 16:36 |
| Saurabh7 | iglesiasg, oh i meant pick one to go ahead with properly | 16:36 |
| Saurabh7 | for example in https://github.com/shogun-toolbox/shogun/issues/1453 | 16:36 |
| Saurabh7 | i couldnt find the said semi tests | 16:36 |
| @iglesiasg | I guess the idea is to do unit tests for cross validation out of the libshogun examples | 16:37 |
| @iglesiasg | Saurabh7, have a look in examples/undocumented/libshogun/* for them | 16:38 |
| @iglesiasg | Saurabh7, I see a few splitting_*_cross_validation.cpp | 16:38 |
| shogun-buildbot | build #352 of precise - libshogun is complete: Success [build successful] Build details are at http://buildbot.shogun-toolbox.org/builders/precise%20-%20libshogun/builds/352 | 16:41 |
| bb | can shogun be compiled natively on mac osx. I tried that and did not make any progress.. | 16:42 |
| Saurabh7 | iglesiasg, thanks i ll have a look | 16:43 |
| bb | besser82, still give me the same error | 16:47 |
| bb | collect2: ld returned 1 exit status make[2]: *** [examples/undocumented/libshogun/balanced_conditional_probability_tree] Error 1 make[1]: *** [examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all] Error 2 make: *** [all] Error 2 | 16:47 |
| besser82 | bb: where is your libhdf5.so located?!? | 16:47 |
| @iglesiasg | bb, it should be indeed possible. At least one core developer is using os x | 16:48 |
| shogun-buildbot | build #2092 of deb3 - modular_interfaces is complete: Failure [failed test csharp modular] Build details are at http://buildbot.shogun-toolbox.org/builders/deb3%20-%20modular_interfaces/builds/2092 blamelist: Fernando Iglesias <fernando.iglesiasg@gmail.com> | 16:49 |
| bb | iglesiasg let me be able to compile it on ubuntu then i will try on osx | 16:49 |
| bb | besser82 how do you check that | 16:50 |
| besser82 | bb: sudo find / -name 'libhdf5.so*' | 16:51 |
| besser82 | bb: please stand by... i'm currently in a phone call for ~ 1h will help you after.... | 16:52 |
| bb | besser82 /usr/lib/libhdf5.so.6 /usr/lib/libhdf5.so.6.0.3 /usr/lib/libhdf5.so | 16:53 |
| @iglesiasg | bb, are you planning to use that part of Shogun? I mean HDF5 | 16:53 |
| bb | besser82 thanks will wait | 16:53 |
| @iglesiasg | bb, if not, then it can be easier just to tell cmake not to use HDF5 stuff | 16:54 |
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| bb | iglesiasg yes that would be nice to have in the near future | 16:56 |
| @wiking | bb: it can.. i can | 17:00 |
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| travis-ci | [travis-ci] it's Fernando Iglesias's turn to pay the next round of drinks for the massacre he caused in shogun-toolbox/shogun: http://travis-ci.org/shogun-toolbox/shogun/builds/15345825 | 17:03 |
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| bb | wiking i get this error on mac osx | 17:04 |
| bb | In file included from /Users/beenishb/Documents/shogun/src/shogun/base/init.cpp:12: In file included from /opt/local/include/shogun/mathematics/Math.h:21: In file included from /opt/local/include/shogun/base/SGObject.h:18: In file included from /opt/local/include/shogun/lib/SGStringList.h:18: /opt/local/include/shogun/lib/SGReferencedData.h:25:2: error: unknown type name 'pthread_spinlock_t'; did you mean 'pthread_rwlock_t'? | 17:04 |
| bb | wiking 3 errors generated. make[2]: *** [src/shogun/CMakeFiles/libshogun.dir/base/init.cpp.o] Error 1 make[1]: *** [src/shogun/CMakeFiles/libshogun.dir/all] Error 2 make: *** [all] Error 2 | 17:08 |
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| @wiking | lisitsyn: fuck man have u seen this: http://tuulos.github.io/sf-python-meetup-sep-2013/#/ | 18:18 |
| bb | besser82, are you back | 18:55 |
| @wiking | bb: aaah that's weird | 18:56 |
| @wiking | bb: can u copy-paste me your cmake output | 18:57 |
| bb | wiking here you go | 19:07 |
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| bb | Beenishs-MacBook-Pro:build beenishb$ sudo cmake -DPythonModular=ON .. -- The C compiler identification is Clang 5.0.0 -- The CXX compiler identification is Clang 5.0.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- wo | 19:09 |
| bb | wiking i would have to copy past multiple times | 19:09 |
| bb | wiking as the irc will not let it copy fully | 19:10 |
| @wiking | bb: pastebin | 19:11 |
| bb | wiking i am not aware of it is it a command in irc | 19:13 |
| bb | -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Could NOT find CCache (missing: CCACHE) -- Found SWIG: /opt/local/bin/swig (found suitable version "2.0.9", minimum required is "2.0.4") -- Looking for C++ include unordered_map -- Looking for C++ include unordered_map - not found -- Using system's malloc -- Looking for isfinite -- Looking for isfinite - not found -- Looking for isinf -- Looking for isinf | 19:15 |
| bb | wiking here you go http://pastebin.com/Am1QGN67 | 19:19 |
| bb | wiking can you see the cmake results.. | 19:21 |
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| @wiking | bb: which version? | 20:08 |
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| bb | wiking this is osx 10.9 | 20:26 |
| bb | wiking do you need any other file | 20:28 |
| @wiking | bb: and i guess u downloaded 3.0.0 release, right? | 20:48 |
| bb | wiking | 20:52 |
| bb | wiking yes it is 3.0.0 when you say it works natively do you mean with or without macports | 20:53 |
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| sonne|osx | evening gents! | 22:34 |
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| @sonney2k | iglesiasg, how is it going? | 23:20 |
| @iglesiasg | sonney2k, hey! | 23:23 |
| @iglesiasg | sonney2k, good, good | 23:23 |
| @iglesiasg | I was in a talk by Stallman this afternoon | 23:23 |
| @sonney2k | iglesiasg, heh - what did he say? | 23:33 |
| @iglesiasg | sonney2k, plenty of stuff about freedom and against what he calls privative software | 23:34 |
| @iglesiasg | sonney2k, I am chasing the C# error in Travis | 23:34 |
| @iglesiasg | trying to execute right now C# examples | 23:34 |
| @iglesiasg | Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'modshogun, Version=0.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. | 23:35 |
| @iglesiasg | sonney2k, do you know how do I point to the right location to get rid of the error ^? | 23:35 |
| @sonney2k | iglesiasg, yes just use the same thing we have in our check.sh script | 23:42 |
| @iglesiasg | sonney2k, ok, let me see | 23:42 |
| @sonney2k | iglesiasg, btw I could run check.sh and examples did work for me ... | 23:43 |
| @iglesiasg | sonney2k, really? C# ones? | 23:43 |
| @sonney2k | iglesiasg, yes it did work locally - I think it works when the examples are compiled with gmcs but not with dmcs | 23:44 |
| @sonney2k | iglesiasg, just try it... | 23:44 |
| @iglesiasg | sonney2k, yeah, I am fetching data atm | 23:45 |
| @iglesiasg | sonney2k, both buildbot and travis complain about it | 23:45 |
| @iglesiasg | hmm | 23:48 |
| @iglesiasg | I should actually just do a sym link to my other data repo instead of fetching it again | 23:48 |
| @iglesiasg | I checkout a new repo and called it shogun-csharp to test out this thing.. | 23:49 |
| @sonney2k | iglesiasg, yeah no need to re-checkout | 23:49 |
| @sonney2k | iglesiasg, I also want to see this fixed btw so keep me updated | 23:49 |
| * sonney2k is too tired now cu tomorrow | 23:50 | |
| @iglesiasg | sonney2k, ok | 23:50 |
| @iglesiasg | good night! | 23:50 |
| --- Log closed Fri Dec 13 00:00:04 2013 | ||
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