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CStateModel Class Referenceabstract

Detailed Description

class CStateModel base, abstract class for the internal state representation used in the CHMSVMModel.

Definition at line 30 of file StateModel.h.

Inheritance diagram for CStateModel:
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Public Member Functions

 CStateModel ()
 
virtual ~CStateModel ()
 
int32_t get_num_states () const
 
int32_t get_num_transmission_params () const
 
virtual SGMatrix< float64_t > loss_matrix (CSequence *label_seq)=0
 
virtual float64_t loss (CSequence *label_seq_lhs, CSequence *label_seq_rhs)=0
 
virtual void reshape_emission_params (SGVector< float64_t > &emission_weights, SGVector< float64_t > w, int32_t num_feats, int32_t num_obs)=0
 
virtual void reshape_emission_params (CDynamicObjectArray *plif_matrix, SGVector< float64_t > w, int32_t num_feats, int32_t num_plif_nodes)=0
 
virtual void reshape_transmission_params (SGMatrix< float64_t > &transmission_weights, SGVector< float64_t > w)=0
 
virtual SGVector< int32_t > labels_to_states (CSequence *label_seq) const =0
 
virtual CSequence * states_to_labels (SGVector< int32_t > state_seq) const =0
 
virtual void weights_to_vector (SGVector< float64_t > &psi, SGMatrix< float64_t > transmission_weights, SGVector< float64_t > emission_weights, int32_t num_feats, int32_t num_obs) const =0
 
virtual SGVector< float64_t > weights_to_vector (SGMatrix< float64_t > transmission_weights, SGVector< float64_t > emission_weights, int32_t num_feats, int32_t num_obs) const =0
 
virtual SGVector< int32_t > get_monotonicity (int32_t num_free_states, int32_t num_feats) const
 
SGVector< float64_t > get_start_states () const
 
SGVector< float64_t > get_stop_states () const
 
virtual const char * get_name () const
 
virtual CSGObject * shallow_copy () const
 
virtual CSGObject * deep_copy () const
 
virtual bool is_generic (EPrimitiveType *generic) const
 
template<class T >
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
void unset_generic ()
 
virtual void print_serializable (const char *prefix="")
 
virtual bool save_serializable (CSerializableFile *file, const char *prefix="")
 
virtual bool load_serializable (CSerializableFile *file, const char *prefix="")
 
void set_global_io (SGIO *io)
 
SGIO * get_global_io ()
 
void set_global_parallel (Parallel *parallel)
 
Parallel * get_global_parallel ()
 
void set_global_version (Version *version)
 
Version * get_global_version ()
 
SGStringList< char > get_modelsel_names ()
 
void print_modsel_params ()
 
char * get_modsel_param_descr (const char *param_name)
 
index_t get_modsel_param_index (const char *param_name)
 
void build_gradient_parameter_dictionary (CMap< TParameter *, CSGObject * > *dict)
 
bool has (const std::string &name) const
 
template<typename T >
bool has (const Tag< T > &tag) const
 
template<typename T , typename U = void>
bool has (const std::string &name) const
 
template<typename T >
void set (const Tag< T > &_tag, const T &value)
 
template<typename T , typename U = void>
void set (const std::string &name, const T &value)
 
template<typename T >
T get (const Tag< T > &_tag) const
 
template<typename T , typename U = void>
T get (const std::string &name) const
 
virtual void update_parameter_hash ()
 
virtual bool parameter_hash_changed ()
 
virtual bool equals (CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)
 
virtual CSGObject * clone ()
 

Public Attributes

SGIO * io
 
Parallel * parallel
 
Version * version
 
Parameter * m_parameters
 
Parameter * m_model_selection_parameters
 
Parameter * m_gradient_parameters
 
uint32_t m_hash
 

Protected Member Functions

virtual void load_serializable_pre () throw (ShogunException)
 
virtual void load_serializable_post () throw (ShogunException)
 
virtual void save_serializable_pre () throw (ShogunException)
 
virtual void save_serializable_post () throw (ShogunException)
 
template<typename T >
void register_param (Tag< T > &_tag, const T &value)
 
template<typename T >
void register_param (const std::string &name, const T &value)
 

Protected Attributes

int32_t m_num_states
 
int32_t m_num_transmission_params
 
SGMatrix< float64_t > m_state_loss_mat
 
SGVector< float64_t > m_p
 
SGVector< float64_t > m_q
 

Constructor & Destructor Documentation

CStateModel ( )

default constructor

Definition at line 15 of file StateModel.cpp.

~CStateModel ( )
virtual

destructor

Definition at line 20 of file StateModel.cpp.

Member Function Documentation

void build_gradient_parameter_dictionary ( CMap< TParameter *, CSGObject * > *  dict)
inherited

Builds a dictionary of all parameters in SGObject as well of those of SGObjects that are parameters of this object. Dictionary maps parameters to the objects that own them.

Parameters
dictdictionary of parameters to be built.

Definition at line 630 of file SGObject.cpp.

CSGObject * clone ( )
virtualinherited

Creates a clone of the current object. This is done via recursively traversing all parameters, which corresponds to a deep copy. Calling equals on the cloned object always returns true although none of the memory of both objects overlaps.

Returns
an identical copy of the given object, which is disjoint in memory. NULL if the clone fails. Note that the returned object is SG_REF'ed

Definition at line 747 of file SGObject.cpp.

CSGObject * deep_copy ( ) const
virtualinherited

A deep copy. All the instance variables will also be copied.

Definition at line 231 of file SGObject.cpp.

bool equals ( CSGObject *  other,
float64_t  accuracy = 0.0,
bool  tolerant = false 
)
virtualinherited

Recursively compares the current SGObject to another one. Compares all registered numerical parameters, recursion upon complex (SGObject) parameters. Does not compare pointers!

May be overwritten but please do with care! Should not be necessary in most cases.

Parameters
otherobject to compare with
accuracyaccuracy to use for comparison (optional)
tolerantallows linient check on float equality (within accuracy)
Returns
true if all parameters were equal, false if not

Definition at line 651 of file SGObject.cpp.

T get ( const Tag< T > &  _tag) const
inherited

Getter for a class parameter, identified by a Tag. Throws an exception if the class does not have such a parameter.

Parameters
_tagname and type information of parameter
Returns
value of the parameter identified by the input tag

Definition at line 367 of file SGObject.h.

T get ( const std::string &  name) const
inherited

Getter for a class parameter, identified by a name. Throws an exception if the class does not have such a parameter.

Parameters
namename of the parameter
Returns
value of the parameter corresponding to the input name and type

Definition at line 388 of file SGObject.h.

SGIO * get_global_io ( )
inherited

get the io object

Returns
io object

Definition at line 268 of file SGObject.cpp.

Parallel * get_global_parallel ( )
inherited

get the parallel object

Returns
parallel object

Definition at line 310 of file SGObject.cpp.

Version * get_global_version ( )
inherited

get the version object

Returns
version object

Definition at line 323 of file SGObject.cpp.

SGStringList< char > get_modelsel_names ( )
inherited
Returns
vector of names of all parameters which are registered for model selection

Definition at line 531 of file SGObject.cpp.

char * get_modsel_param_descr ( const char *  param_name)
inherited

Returns description of a given parameter string, if it exists. SG_ERROR otherwise

Parameters
param_namename of the parameter
Returns
description of the parameter

Definition at line 555 of file SGObject.cpp.

index_t get_modsel_param_index ( const char *  param_name)
inherited

Returns index of model selection parameter with provided index

Parameters
param_namename of model selection parameter
Returns
index of model selection parameter with provided name, -1 if there is no such

Definition at line 568 of file SGObject.cpp.

SGVector< int32_t > get_monotonicity ( int32_t  num_free_states,
int32_t  num_feats 
) const
virtual

specify monotonicity constraints for feature scoring functions. The elements of the vector returned can take one of three values:

  • +1 if monotonically increasing scoring function
  • -1 if monotonically decreasing scoring function
  • 0 if no constraint in the monotonicity

By default, this method returns a vector of zeros (no monotonicity constraints). Re-implement this method in a child class to specify constraints.

Parameters
num_free_statesnumber of states whose parameters are learnt
num_featsnumber of features
Returns
vector with monotonicity constraints of length num_feats times num_free_states

Reimplemented in CTwoStateModel.

Definition at line 48 of file StateModel.cpp.

virtual const char* get_name ( ) const
virtual
Returns
name of SGSerializable

Implements CSGObject.

Reimplemented in CTwoStateModel.

Definition at line 211 of file StateModel.h.

int32_t get_num_states ( ) const
Returns
number of states

Definition at line 24 of file StateModel.cpp.

int32_t get_num_transmission_params ( ) const
Returns
number of transmission parameters to be learnt

Definition at line 29 of file StateModel.cpp.

SGVector< float64_t > get_start_states ( ) const

return the distribution of start states, i.e. the specification of which states may appear in the start of a state sequence and which may not. The elements of the vector returned can take one out of two values:

  • -INFTY if the state is not allowed to be a start state
  • 0 otherwise

The distrubtion of start states m_p must be initialized in the constructor of CStateModel's child classes.

Returns
the distribution of start states m_p, vector of m_num_states elements

Definition at line 56 of file StateModel.cpp.

SGVector< float64_t > get_stop_states ( ) const

return the distribution of stop states, i.e. the specification of which states may appear in the end of a state sequence and which may not. The elements of the vector returned can take one out of two values:

  • -INFTY if the state is not allowed to be a stop state
  • 0 otherwise

The distrubtion of stop states m_q must be initialized in the constructor of CStateModel's child classes.

Returns
the distribution of start states m_p, vector of m_num_states elements

Definition at line 61 of file StateModel.cpp.

bool has ( const std::string &  name) const
inherited

Checks if object has a class parameter identified by a name.

Parameters
namename of the parameter
Returns
true if the parameter exists with the input name

Definition at line 289 of file SGObject.h.

bool has ( const Tag< T > &  tag) const
inherited

Checks if object has a class parameter identified by a Tag.

Parameters
tagtag of the parameter containing name and type information
Returns
true if the parameter exists with the input tag

Definition at line 301 of file SGObject.h.

bool has ( const std::string &  name) const
inherited

Checks if a type exists for a class parameter identified by a name.

Parameters
namename of the parameter
Returns
true if the parameter exists with the input name and type

Definition at line 312 of file SGObject.h.

bool is_generic ( EPrimitiveType *  generic) const
virtualinherited

If the SGSerializable is a class template then TRUE will be returned and GENERIC is set to the type of the generic.

Parameters
genericset to the type of the generic if returning TRUE
Returns
TRUE if a class template.

Definition at line 329 of file SGObject.cpp.

virtual SGVector< int32_t > labels_to_states ( CSequence *  label_seq) const
pure virtual

translates label sequence to state sequence

Parameters
label_seqlabel sequence
Returns
state sequence

Implemented in CTwoStateModel.

bool load_serializable ( CSerializableFile *  file,
const char *  prefix = "" 
)
virtualinherited

Load this object from file. If it will fail (returning FALSE) then this object will contain inconsistent data and should not be used!

Parameters
filewhere to load from
prefixprefix for members
Returns
TRUE if done, otherwise FALSE

Definition at line 402 of file SGObject.cpp.

void load_serializable_post ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_POST is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CKernel, CWeightedDegreePositionStringKernel, CList, CAlphabet, CLinearHMM, CGaussianKernel, CInverseMultiQuadricKernel, CCircularKernel, and CExponentialKernel.

Definition at line 459 of file SGObject.cpp.

void load_serializable_pre ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_PRE is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool >, and CDynamicObjectArray.

Definition at line 454 of file SGObject.cpp.

virtual float64_t loss ( CSequence *  label_seq_lhs,
CSequence *  label_seq_rhs 
)
pure virtual

computes the loss between two sequences of labels using the Hamming loss and the state loss matrix

Parameters
label_seq_lhsone label sequence
label_seq_rhsother label sequence
Returns
the Hamming loss

Implemented in CTwoStateModel.

virtual SGMatrix< float64_t > loss_matrix ( CSequence *  label_seq)
pure virtual

computes a loss matrix with m_num_states rows and number of columns equal to the length of label_seq. This matrix can be added directly to the emission matrix used in Viterbi decoding during training to form the loss-augmented emission matrix

Parameters
label_seqlabel sequence (normally the true label sequence)
Returns
the loss matrix

Implemented in CTwoStateModel.

bool parameter_hash_changed ( )
virtualinherited
Returns
whether parameter combination has changed since last update

Definition at line 295 of file SGObject.cpp.

void print_modsel_params ( )
inherited

prints all parameter registered for model selection and their type

Definition at line 507 of file SGObject.cpp.

void print_serializable ( const char *  prefix = "")
virtualinherited

prints registered parameters out

Parameters
prefixprefix for members

Definition at line 341 of file SGObject.cpp.

void register_param ( Tag< T > &  _tag,
const T &  value 
)
protectedinherited

Registers a class parameter which is identified by a tag. This enables the parameter to be modified by set() and retrieved by get(). Parameters can be registered in the constructor of the class.

Parameters
_tagname and type information of parameter
valuevalue of the parameter

Definition at line 439 of file SGObject.h.

void register_param ( const std::string &  name,
const T &  value 
)
protectedinherited

Registers a class parameter which is identified by a name. This enables the parameter to be modified by set() and retrieved by get(). Parameters can be registered in the constructor of the class.

Parameters
namename of the parameter
valuevalue of the parameter along with type information

Definition at line 452 of file SGObject.h.

virtual void reshape_emission_params ( SGVector< float64_t > &  emission_weights,
SGVector< float64_t >  w,
int32_t  num_feats,
int32_t  num_obs 
)
pure virtual

arranges the emission parameters of the weight vector into a vector adding zero elements for the states whose parameters are not learnt. This vector is suitable to iterate through when constructing the emission matrix used in Viterbi decoding

Parameters
emission_weightsemission parameters outputted
wthe weight vector
num_featsnumber of features
num_obsnumber of emission scores per feature and state

Implemented in CTwoStateModel.

virtual void reshape_emission_params ( CDynamicObjectArray *  plif_matrix,
SGVector< float64_t >  w,
int32_t  num_feats,
int32_t  num_plif_nodes 
)
pure virtual

arranges the emission parameters of the weight vector into a matrix of PLiFs adding zero elements for the states whose parameters are not learnt.

Parameters
plif_matrixmatrix of PLiFs outputted
wthe weight vector
num_featsnumber of features
num_plif_nodesnumber of nodes in the PLiFs

Implemented in CTwoStateModel.

virtual void reshape_transmission_params ( SGMatrix< float64_t > &  transmission_weights,
SGVector< float64_t >  w 
)
pure virtual

arranges the transmission parameters of the weight vector into a matrix adding zero elements for the states whose parameters are not learnt. This matrix is suitable to iterate during Viterbi decoding

Parameters
transmission_weightstransmission parameters outputted
wthe weight vector

Implemented in CTwoStateModel.

bool save_serializable ( CSerializableFile *  file,
const char *  prefix = "" 
)
virtualinherited

Save this object to file.

Parameters
filewhere to save the object; will be closed during returning if PREFIX is an empty string.
prefixprefix for members
Returns
TRUE if done, otherwise FALSE

Definition at line 347 of file SGObject.cpp.

void save_serializable_post ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_POST is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CKernel.

Definition at line 469 of file SGObject.cpp.

void save_serializable_pre ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_PRE is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CKernel, CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool >, and CDynamicObjectArray.

Definition at line 464 of file SGObject.cpp.

void set ( const Tag< T > &  _tag,
const T &  value 
)
inherited

Setter for a class parameter, identified by a Tag. Throws an exception if the class does not have such a parameter.

Parameters
_tagname and type information of parameter
valuevalue of the parameter

Definition at line 328 of file SGObject.h.

void set ( const std::string &  name,
const T &  value 
)
inherited

Setter for a class parameter, identified by a name. Throws an exception if the class does not have such a parameter.

Parameters
namename of the parameter
valuevalue of the parameter along with type information

Definition at line 354 of file SGObject.h.

void set_generic ( )
inherited

Definition at line 74 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 79 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 84 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 89 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 94 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 99 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 104 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 109 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 114 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 119 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 124 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 129 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 134 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 139 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 144 of file SGObject.cpp.

void set_generic ( )
inherited

set generic type to T

void set_global_io ( SGIO *  io)
inherited

set the io object

Parameters
ioio object to use

Definition at line 261 of file SGObject.cpp.

void set_global_parallel ( Parallel *  parallel)
inherited

set the parallel object

Parameters
parallelparallel object to use

Definition at line 274 of file SGObject.cpp.

void set_global_version ( Version *  version)
inherited

set the version object

Parameters
versionversion object to use

Definition at line 316 of file SGObject.cpp.

CSGObject * shallow_copy ( ) const
virtualinherited

A shallow copy. All the SGObject instance variables will be simply assigned and SG_REF-ed.

Reimplemented in CGaussianKernel.

Definition at line 225 of file SGObject.cpp.

virtual CSequence* states_to_labels ( SGVector< int32_t >  state_seq) const
pure virtual

translates state sequence to label sequence

Parameters
state_seqstate sequence
Returns
label sequence

Implemented in CTwoStateModel.

void unset_generic ( )
inherited

unset generic type

this has to be called in classes specializing a template class

Definition at line 336 of file SGObject.cpp.

void update_parameter_hash ( )
virtualinherited

Updates the hash of current parameter combination

Definition at line 281 of file SGObject.cpp.

virtual void weights_to_vector ( SGVector< float64_t > &  psi,
SGMatrix< float64_t >  transmission_weights,
SGVector< float64_t >  emission_weights,
int32_t  num_feats,
int32_t  num_obs 
) const
pure virtual

reshapes the transition and emission weights into a vector (the joint feature vector so it will be possible to take the dot product with the weight vector). Version with the joint feature vector as parameter by reference

Parameters
psioutput vector
transmission_weightscounts of the state transitions for a state sequence
emission_weightscounts of the emission scores for a state sequence and a feature vector
num_featsnumber of features
num_obsnumber of emission scores per feature and state

Implemented in CTwoStateModel.

virtual SGVector< float64_t > weights_to_vector ( SGMatrix< float64_t >  transmission_weights,
SGVector< float64_t >  emission_weights,
int32_t  num_feats,
int32_t  num_obs 
) const
pure virtual

reshapes the transition and emission weights into a vector (the joint feature vector so it will be possible to take the dot product with the weight vector). Version returning the joint feature vector

Parameters
transmission_weightscounts of the state transitions for a state sequence
emission_weightscounts of the emission scores for a state sequence and a feature vector
num_featsnumber of features
num_obsnumber of emission scores per feature and state
Returns
psi output vector

Implemented in CTwoStateModel.

Member Data Documentation

SGIO* io
inherited

io

Definition at line 537 of file SGObject.h.

Parameter* m_gradient_parameters
inherited

parameters wrt which we can compute gradients

Definition at line 552 of file SGObject.h.

uint32_t m_hash
inherited

Hash of parameter values

Definition at line 555 of file SGObject.h.

Parameter* m_model_selection_parameters
inherited

model selection parameters

Definition at line 549 of file SGObject.h.

int32_t m_num_states
protected

the number of states

Definition at line 219 of file StateModel.h.

int32_t m_num_transmission_params
protected

the number of transmission parameters

Definition at line 222 of file StateModel.h.

SGVector< float64_t > m_p
protected

the distribution of start states

Definition at line 228 of file StateModel.h.

Parameter* m_parameters
inherited

parameters

Definition at line 546 of file SGObject.h.

SGVector< float64_t > m_q
protected

the distribution of stop states

Definition at line 231 of file StateModel.h.

SGMatrix< float64_t > m_state_loss_mat
protected

state loss matrix, loss for every pair of states

Definition at line 225 of file StateModel.h.

Parallel* parallel
inherited

parallel

Definition at line 540 of file SGObject.h.

Version* version
inherited

version

Definition at line 543 of file SGObject.h.

The documentation for this class was generated from the following files:
SHOGUN Machine Learning Toolbox - Documentation